Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Gm25016-201ENSMUST00000158399 131 ntBASIC15.58■□□□□ 0.08
Nubp1Q9R060 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Gm37292-201ENSMUST00000192062 758 ntBASIC15.58■□□□□ 0.08
Nubp1Q9R060 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
Nubp1Q9R060 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 4931428L18Rik-202ENSMUST00000135245 889 ntAPPRIS P5 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC15.57■□□□□ 0.08
Nubp1Q9R060 Gm42545-201ENSMUST00000202755 922 ntBASIC15.57■□□□□ 0.08
Nubp1Q9R060 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.57■□□□□ 0.08
Nubp1Q9R060 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nubp1Q9R060 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Gm14464-201ENSMUST00000119658 1254 ntBASIC15.56■□□□□ 0.08
Nubp1Q9R060 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nubp1Q9R060 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Gm32699-201ENSMUST00000221728 1988 ntBASIC15.55■□□□□ 0.08
Nubp1Q9R060 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Gm38116-201ENSMUST00000193873 1533 ntBASIC15.55■□□□□ 0.08
Nubp1Q9R060 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Gm8369-204ENSMUST00000188633 1227 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Otx2os1-204ENSMUST00000227221 751 ntBASIC15.55■□□□□ 0.08
Nubp1Q9R060 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
Nubp1Q9R060 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nubp1Q9R060 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Nubp1Q9R060 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms