Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Gm42545-201ENSMUST00000202755 922 ntBASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Cpsf3Q9QXK7 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.23■□□□□ 0.67
Cpsf3Q9QXK7 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cpsf3Q9QXK7 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Gm37292-201ENSMUST00000192062 758 ntBASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Gm43183-201ENSMUST00000200632 547 ntBASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cpsf3Q9QXK7 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cpsf3Q9QXK7 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cpsf3Q9QXK7 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cpsf3Q9QXK7 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms