Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nup88Q8CEC0 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nup88Q8CEC0 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Nup88Q8CEC0 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Nup88Q8CEC0 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Nup88Q8CEC0 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Nup88Q8CEC0 Gm38308-201ENSMUST00000194934 1809 ntBASIC21.08■□□□□ 0.96
Nup88Q8CEC0 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Nup88Q8CEC0 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC21.08■□□□□ 0.96
Nup88Q8CEC0 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Nup88Q8CEC0 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Nup88Q8CEC0 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Gm10812-201ENSMUST00000099864 546 ntBASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Nup88Q8CEC0 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Gm9194-201ENSMUST00000220749 1447 ntBASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Nup88Q8CEC0 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Gm10167-201ENSMUST00000150411 1479 ntBASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Nup88Q8CEC0 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Gm19094-201ENSMUST00000209791 1246 ntBASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
Nup88Q8CEC0 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Gm19439-201ENSMUST00000198195 2273 ntBASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Gm37805-201ENSMUST00000192612 1094 ntBASIC21.03■□□□□ 0.96
Nup88Q8CEC0 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC21.03■□□□□ 0.96
Nup88Q8CEC0 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Gm12896-201ENSMUST00000118430 226 ntBASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Gm27275-201ENSMUST00000184318 272 ntBASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Nup88Q8CEC0 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
Nup88Q8CEC0 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Nup88Q8CEC0 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 128.2 ms