Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Hmgb4Q6P8W9 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Hmgb4Q6P8W9 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Hmgb4Q6P8W9 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Hmgb4Q6P8W9 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Hmgb4Q6P8W9 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.68■□□□□ 0.58
Hmgb4Q6P8W9 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Hmgb4Q6P8W9 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Hmgb4Q6P8W9 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Zfp783-201ENSMUST00000095946 670 ntBASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.65■□□□□ 0.58
Hmgb4Q6P8W9 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb4Q6P8W9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Hmgb4Q6P8W9 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms