Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.05■□□□□ 0.48
Six4Q61321 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Six4Q61321 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Six4Q61321 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Six4Q61321 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Six4Q61321 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Six4Q61321 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Six4Q61321 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.04■□□□□ 0.48
Six4Q61321 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Six4Q61321 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.04■□□□□ 0.48
Six4Q61321 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.04■□□□□ 0.48
Six4Q61321 Gm13168-201ENSMUST00000121771 632 ntBASIC18.04■□□□□ 0.48
Six4Q61321 Gm18666-201ENSMUST00000190039 958 ntBASIC18.04■□□□□ 0.48
Six4Q61321 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.04■□□□□ 0.48
Six4Q61321 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Six4Q61321 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.04■□□□□ 0.48
Six4Q61321 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Six4Q61321 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Six4Q61321 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Six4Q61321 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.03■□□□□ 0.48
Six4Q61321 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.03■□□□□ 0.48
Six4Q61321 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.03■□□□□ 0.48
Six4Q61321 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Six4Q61321 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Six4Q61321 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Six4Q61321 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Six4Q61321 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Six4Q61321 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Six4Q61321 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Six4Q61321 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.03■□□□□ 0.48
Six4Q61321 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Six4Q61321 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.02■□□□□ 0.48
Six4Q61321 Gm10698-201ENSMUST00000182663 604 ntBASIC18.02■□□□□ 0.48
Six4Q61321 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.02■□□□□ 0.48
Six4Q61321 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.02■□□□□ 0.48
Six4Q61321 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Six4Q61321 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Six4Q61321 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Six4Q61321 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Six4Q61321 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Six4Q61321 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Six4Q61321 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.01■□□□□ 0.47
Six4Q61321 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Six4Q61321 Mir6349-201ENSMUST00000184059 97 ntBASIC18.01■□□□□ 0.47
Six4Q61321 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Six4Q61321 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Six4Q61321 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Six4Q61321 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18■□□□□ 0.47
Six4Q61321 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18■□□□□ 0.47
Six4Q61321 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18■□□□□ 0.47
Six4Q61321 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Six4Q61321 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18■□□□□ 0.47
Six4Q61321 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18■□□□□ 0.47
Six4Q61321 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Six4Q61321 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Six4Q61321 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.99■□□□□ 0.47
Six4Q61321 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Six4Q61321 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Six4Q61321 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Six4Q61321 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Six4Q61321 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Six4Q61321 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Six4Q61321 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.99■□□□□ 0.47
Six4Q61321 Gm42545-201ENSMUST00000202755 922 ntBASIC17.99■□□□□ 0.47
Six4Q61321 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Six4Q61321 Gm18025-201ENSMUST00000221733 862 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms