Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Upf3bQ3ULL6 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Upf3bQ3ULL6 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Gm10653-202ENSMUST00000139570 835 ntBASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Upf3bQ3ULL6 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.1■□□□□ 0.65
Upf3bQ3ULL6 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Upf3bQ3ULL6 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Upf3bQ3ULL6 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Upf3bQ3ULL6 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Upf3bQ3ULL6 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Upf3bQ3ULL6 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Upf3bQ3ULL6 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Upf3bQ3ULL6 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Upf3bQ3ULL6 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Gm20760-201ENSMUST00000179197 648 ntBASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Upf3bQ3ULL6 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Gm13158-201ENSMUST00000122007 736 ntBASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms