Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Lmx1bO88609 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lmx1bO88609 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.18■□□□□ 0.18
Lmx1bO88609 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Lmx1bO88609 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.17■□□□□ 0.18
Lmx1bO88609 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.17■□□□□ 0.18
Lmx1bO88609 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC16.17■□□□□ 0.18
Lmx1bO88609 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC16.17■□□□□ 0.18
Lmx1bO88609 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Lmx1bO88609 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Lmx1bO88609 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Dapk1-207ENSMUST00000226059 5009 ntBASIC16.16■□□□□ 0.18
Lmx1bO88609 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Lmx1bO88609 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
Lmx1bO88609 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.16■□□□□ 0.18
Lmx1bO88609 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Lmx1bO88609 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC16.16■□□□□ 0.18
Lmx1bO88609 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Lmx1bO88609 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Lmx1bO88609 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC16.15■□□□□ 0.18
Lmx1bO88609 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.15■□□□□ 0.18
Lmx1bO88609 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Mir1199-201ENSMUST00000117015 119 ntBASIC16.15■□□□□ 0.18
Lmx1bO88609 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.15■□□□□ 0.18
Lmx1bO88609 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Lmx1bO88609 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC16.15■□□□□ 0.18
Lmx1bO88609 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.15■□□□□ 0.18
Lmx1bO88609 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Lmx1bO88609 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.15■□□□□ 0.18
Lmx1bO88609 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
Lmx1bO88609 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.14■□□□□ 0.17
Lmx1bO88609 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC16.14■□□□□ 0.17
Lmx1bO88609 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Lmx1bO88609 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Lmx1bO88609 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.14■□□□□ 0.17
Lmx1bO88609 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.14■□□□□ 0.17
Lmx1bO88609 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.14■□□□□ 0.17
Lmx1bO88609 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 AC123834.2-201ENSMUST00000224038 2340 ntBASIC16.14■□□□□ 0.17
Lmx1bO88609 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Lmx1bO88609 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Lmx1bO88609 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC16.13■□□□□ 0.17
Lmx1bO88609 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Lmx1bO88609 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.13■□□□□ 0.17
Lmx1bO88609 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Lmx1bO88609 Gm38285-201ENSMUST00000192928 922 ntBASIC16.13■□□□□ 0.17
Lmx1bO88609 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC16.13■□□□□ 0.17
Lmx1bO88609 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.13■□□□□ 0.17
Lmx1bO88609 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Lmx1bO88609 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms