Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Sdc4O35988 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Sdc4O35988 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.43■□□□□ 0.54
Sdc4O35988 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Mir5122-201ENSMUST00000175004 89 ntBASIC18.43■□□□□ 0.54
Sdc4O35988 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Sdc4O35988 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Sdc4O35988 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.43■□□□□ 0.54
Sdc4O35988 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Sdc4O35988 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sdc4O35988 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sdc4O35988 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.42■□□□□ 0.54
Sdc4O35988 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Sdc4O35988 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
Sdc4O35988 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Sdc4O35988 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Sdc4O35988 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.42■□□□□ 0.54
Sdc4O35988 Mir2861-201ENSMUST00000175539 82 ntBASIC18.42■□□□□ 0.54
Sdc4O35988 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sdc4O35988 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Sdc4O35988 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sdc4O35988 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sdc4O35988 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sdc4O35988 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sdc4O35988 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sdc4O35988 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Sdc4O35988 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.41■□□□□ 0.54
Sdc4O35988 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sdc4O35988 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
Sdc4O35988 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.41■□□□□ 0.54
Sdc4O35988 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sdc4O35988 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sdc4O35988 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Sdc4O35988 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.41■□□□□ 0.54
Sdc4O35988 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sdc4O35988 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sdc4O35988 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sdc4O35988 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.4■□□□□ 0.54
Sdc4O35988 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Sdc4O35988 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.4■□□□□ 0.54
Sdc4O35988 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sdc4O35988 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Sdc4O35988 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Sdc4O35988 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Sdc4O35988 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sdc4O35988 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.39■□□□□ 0.53
Sdc4O35988 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.39■□□□□ 0.53
Sdc4O35988 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.39■□□□□ 0.53
Sdc4O35988 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sdc4O35988 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Sdc4O35988 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.39■□□□□ 0.53
Sdc4O35988 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sdc4O35988 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Sdc4O35988 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.39■□□□□ 0.53
Sdc4O35988 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Sdc4O35988 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Sdc4O35988 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Sdc4O35988 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.38■□□□□ 0.53
Sdc4O35988 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Sdc4O35988 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
Sdc4O35988 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Sdc4O35988 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Sdc4O35988 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Sdc4O35988 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Sdc4O35988 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.37■□□□□ 0.53
Sdc4O35988 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Sdc4O35988 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.37■□□□□ 0.53
Sdc4O35988 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Sdc4O35988 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms