Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chd3B1AR17 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chd3B1AR17 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
Chd3B1AR17 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Chd3B1AR17 Gm7977-201ENSMUST00000193787 748 ntBASIC17.54■□□□□ 0.4
Chd3B1AR17 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Chd3B1AR17 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.54■□□□□ 0.4
Chd3B1AR17 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Chd3B1AR17 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Chd3B1AR17 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.53■□□□□ 0.4
Chd3B1AR17 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Chd3B1AR17 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.53■□□□□ 0.4
Chd3B1AR17 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC17.53■□□□□ 0.4
Chd3B1AR17 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Chd3B1AR17 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Chd3B1AR17 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.53■□□□□ 0.4
Chd3B1AR17 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Chd3B1AR17 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.52■□□□□ 0.4
Chd3B1AR17 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.52■□□□□ 0.4
Chd3B1AR17 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Chd3B1AR17 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chd3B1AR17 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.52■□□□□ 0.4
Chd3B1AR17 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.52■□□□□ 0.4
Chd3B1AR17 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chd3B1AR17 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.52■□□□□ 0.4
Chd3B1AR17 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chd3B1AR17 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Chd3B1AR17 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Chd3B1AR17 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Chd3B1AR17 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.52■□□□□ 0.39
Chd3B1AR17 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chd3B1AR17 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chd3B1AR17 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chd3B1AR17 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Chd3B1AR17 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.51■□□□□ 0.39
Chd3B1AR17 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Gm6433-201ENSMUST00000118634 875 ntBASIC17.51■□□□□ 0.39
Chd3B1AR17 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.51■□□□□ 0.39
Chd3B1AR17 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC17.51■□□□□ 0.39
Chd3B1AR17 Gm30025-201ENSMUST00000218555 728 ntBASIC17.51■□□□□ 0.39
Chd3B1AR17 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Chd3B1AR17 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Chd3B1AR17 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Chd3B1AR17 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Gm11643-201ENSMUST00000119578 864 ntBASIC17.51■□□□□ 0.39
Chd3B1AR17 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Chd3B1AR17 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Chd3B1AR17 Gm9987-201ENSMUST00000069768 567 ntBASIC17.51■□□□□ 0.39
Chd3B1AR17 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 Gm12085-201ENSMUST00000119263 940 ntBASIC17.5■□□□□ 0.39
Chd3B1AR17 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Chd3B1AR17 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.5■□□□□ 0.39
Chd3B1AR17 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Chd3B1AR17 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Chd3B1AR17 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Chd3B1AR17 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.49■□□□□ 0.39
Chd3B1AR17 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.49■□□□□ 0.39
Chd3B1AR17 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms