Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trbv1A0A0B4J1G7 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Gm2011-201ENSMUST00000203124 1263 ntBASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trbv1A0A0B4J1G7 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Trbv1A0A0B4J1G7 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trbv1A0A0B4J1G7 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trbv1A0A0B4J1G7 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
Trbv1A0A0B4J1G7 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trbv1A0A0B4J1G7 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trbv1A0A0B4J1G7 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms