Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC19.72■□□□□ 0.75
CtcfQ61164 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.72■□□□□ 0.75
CtcfQ61164 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.72■□□□□ 0.75
CtcfQ61164 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.72■□□□□ 0.75
CtcfQ61164 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.72■□□□□ 0.75
CtcfQ61164 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.72■□□□□ 0.75
CtcfQ61164 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
CtcfQ61164 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CtcfQ61164 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.71■□□□□ 0.75
CtcfQ61164 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CtcfQ61164 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CtcfQ61164 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.71■□□□□ 0.75
CtcfQ61164 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC19.71■□□□□ 0.75
CtcfQ61164 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.71■□□□□ 0.75
CtcfQ61164 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CtcfQ61164 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
CtcfQ61164 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CtcfQ61164 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CtcfQ61164 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CtcfQ61164 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CtcfQ61164 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CtcfQ61164 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CtcfQ61164 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CtcfQ61164 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CtcfQ61164 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CtcfQ61164 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CtcfQ61164 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CtcfQ61164 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Tgds-204ENSMUST00000228543 1594 ntBASIC19.69■□□□□ 0.74
CtcfQ61164 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CtcfQ61164 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.68■□□□□ 0.74
CtcfQ61164 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CtcfQ61164 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CtcfQ61164 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CtcfQ61164 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.67■□□□□ 0.74
CtcfQ61164 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.67■□□□□ 0.74
CtcfQ61164 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CtcfQ61164 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.67■□□□□ 0.74
CtcfQ61164 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CtcfQ61164 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.66■□□□□ 0.74
CtcfQ61164 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.66■□□□□ 0.74
CtcfQ61164 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CtcfQ61164 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
CtcfQ61164 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 90.3 ms