Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col28a1Q2UY11 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.39■□□□□ 0.38
Col28a1Q2UY11 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Col28a1Q2UY11 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col28a1Q2UY11 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col28a1Q2UY11 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col28a1Q2UY11 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Gm9988-201ENSMUST00000069786 435 ntBASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col28a1Q2UY11 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Tgds-204ENSMUST00000228543 1594 ntBASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Col28a1Q2UY11 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Gm27801-201ENSMUST00000184174 223 ntBASIC17.37■□□□□ 0.37
Col28a1Q2UY11 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.37■□□□□ 0.37
Col28a1Q2UY11 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col28a1Q2UY11 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms