Protein–RNA interactions for Protein: P43680

Sox18, Transcription factor SOX-18, mousemouse

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox18P43680 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
Sox18P43680 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox18P43680 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Sox18P43680 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
Sox18P43680 Mir6349-201ENSMUST00000184059 97 ntBASIC17.16■□□□□ 0.34
Sox18P43680 Gm2274-201ENSMUST00000184539 609 ntBASIC17.16■□□□□ 0.34
Sox18P43680 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox18P43680 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Sox18P43680 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC17.15■□□□□ 0.34
Sox18P43680 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Sox18P43680 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sox18P43680 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Sox18P43680 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Sox18P43680 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Sox18P43680 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.14■□□□□ 0.33
Sox18P43680 Gm7153-201ENSMUST00000117092 455 ntBASIC17.14■□□□□ 0.33
Sox18P43680 Gm28033-201ENSMUST00000184224 96 ntBASIC17.14■□□□□ 0.33
Sox18P43680 Gm38285-201ENSMUST00000192928 922 ntBASIC17.14■□□□□ 0.33
Sox18P43680 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.14■□□□□ 0.33
Sox18P43680 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Sox18P43680 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Sox18P43680 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.14■□□□□ 0.33
Sox18P43680 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sox18P43680 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Sox18P43680 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Sox18P43680 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox18P43680 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox18P43680 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox18P43680 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox18P43680 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Sox18P43680 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.13■□□□□ 0.33
Sox18P43680 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC17.13■□□□□ 0.33
Sox18P43680 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Sox18P43680 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox18P43680 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox18P43680 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sox18P43680 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Sox18P43680 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Sox18P43680 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Sox18P43680 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox18P43680 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox18P43680 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox18P43680 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
Sox18P43680 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Sox18P43680 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.12■□□□□ 0.33
Sox18P43680 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Sox18P43680 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Sox18P43680 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox18P43680 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sox18P43680 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Sox18P43680 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 Gm27704-201ENSMUST00000185094 107 ntBASIC17.11■□□□□ 0.33
Sox18P43680 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.11■□□□□ 0.33
Sox18P43680 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC17.11■□□□□ 0.33
Sox18P43680 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox18P43680 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.1■□□□□ 0.33
Sox18P43680 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.1■□□□□ 0.33
Sox18P43680 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox18P43680 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms