Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Traf1P39428 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
Traf1P39428 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Traf1P39428 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.72■□□□□ 0.91
Traf1P39428 Gm43183-201ENSMUST00000200632 547 ntBASIC20.72■□□□□ 0.91
Traf1P39428 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.72■□□□□ 0.91
Traf1P39428 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Traf1P39428 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Traf1P39428 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Traf1P39428 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Traf1P39428 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC20.71■□□□□ 0.91
Traf1P39428 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Traf1P39428 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Traf1P39428 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Traf1P39428 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Traf1P39428 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.71■□□□□ 0.91
Traf1P39428 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Traf1P39428 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Traf1P39428 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Rarb-207ENSMUST00000225921 2756 ntBASIC20.7■□□□□ 0.9
Traf1P39428 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.7■□□□□ 0.9
Traf1P39428 Gm37055-201ENSMUST00000191866 133 ntBASIC20.7■□□□□ 0.9
Traf1P39428 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.7■□□□□ 0.9
Traf1P39428 AC175538.1-201ENSMUST00000225343 1269 ntBASIC20.7■□□□□ 0.9
Traf1P39428 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Traf1P39428 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.7■□□□□ 0.9
Traf1P39428 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC20.69■□□□□ 0.9
Traf1P39428 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.69■□□□□ 0.9
Traf1P39428 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC20.69■□□□□ 0.9
Traf1P39428 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Traf1P39428 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Traf1P39428 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Traf1P39428 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.68■□□□□ 0.9
Traf1P39428 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC20.68■□□□□ 0.9
Traf1P39428 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.68■□□□□ 0.9
Traf1P39428 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.68■□□□□ 0.9
Traf1P39428 Gm42545-201ENSMUST00000202755 922 ntBASIC20.68■□□□□ 0.9
Traf1P39428 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
Traf1P39428 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Traf1P39428 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Traf1P39428 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.67■□□□□ 0.9
Traf1P39428 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.67■□□□□ 0.9
Traf1P39428 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.67■□□□□ 0.9
Traf1P39428 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.67■□□□□ 0.9
Traf1P39428 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Traf1P39428 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Traf1P39428 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Traf1P39428 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
Traf1P39428 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.66■□□□□ 0.9
Traf1P39428 Grk6-206ENSMUST00000224995 2971 ntBASIC20.66■□□□□ 0.9
Traf1P39428 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Traf1P39428 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Traf1P39428 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Traf1P39428 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC20.66■□□□□ 0.9
Traf1P39428 Mir5122-201ENSMUST00000175004 89 ntBASIC20.66■□□□□ 0.9
Traf1P39428 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Traf1P39428 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Traf1P39428 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms