Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC14.91□□□□□ -0.02
Hmgb3O54879 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Hmgb3O54879 Gm10209-201ENSMUST00000203397 1607 ntBASIC14.91□□□□□ -0.02
Hmgb3O54879 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
Hmgb3O54879 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Hmgb3O54879 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC14.89□□□□□ -0.03
Hmgb3O54879 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Hmgb3O54879 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Hmgb3O54879 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC14.89□□□□□ -0.03
Hmgb3O54879 Gm22238-201ENSMUST00000175222 88 ntBASIC14.89□□□□□ -0.03
Hmgb3O54879 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC14.89□□□□□ -0.03
Hmgb3O54879 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Fcho2-208ENSMUST00000224992 2964 ntBASIC14.89□□□□□ -0.03
Hmgb3O54879 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Hmgb3O54879 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Hmgb3O54879 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Hmgb3O54879 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Hmgb3O54879 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 AC121598.2-201ENSMUST00000228376 2325 ntBASIC14.88□□□□□ -0.03
Hmgb3O54879 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Hmgb3O54879 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC14.88□□□□□ -0.03
Hmgb3O54879 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Hmgb3O54879 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC14.87□□□□□ -0.03
Hmgb3O54879 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
Hmgb3O54879 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC14.87□□□□□ -0.03
Hmgb3O54879 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Hmgb3O54879 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Hmgb3O54879 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms