Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Clk3O35492 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clk3O35492 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Gm27405-201ENSMUST00000184201 112 ntBASIC17.05■□□□□ 0.32
Clk3O35492 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Clk3O35492 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Clk3O35492 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.05■□□□□ 0.32
Clk3O35492 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Clk3O35492 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.04■□□□□ 0.32
Clk3O35492 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Clk3O35492 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Clk3O35492 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.04■□□□□ 0.32
Clk3O35492 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.04■□□□□ 0.32
Clk3O35492 Gm6420-201ENSMUST00000193885 723 ntBASIC17.04■□□□□ 0.32
Clk3O35492 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.04■□□□□ 0.32
Clk3O35492 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Clk3O35492 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
Clk3O35492 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Clk3O35492 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Clk3O35492 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Clk3O35492 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Clk3O35492 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.02■□□□□ 0.32
Clk3O35492 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Clk3O35492 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.02■□□□□ 0.32
Clk3O35492 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.02■□□□□ 0.32
Clk3O35492 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
Clk3O35492 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC17.02■□□□□ 0.32
Clk3O35492 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.02■□□□□ 0.32
Clk3O35492 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC17.02■□□□□ 0.32
Clk3O35492 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Clk3O35492 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Clk3O35492 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Clk3O35492 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Clk3O35492 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Clk3O35492 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Nespas-201ENSMUST00000143738 1083 ntBASIC17.01■□□□□ 0.31
Clk3O35492 Gm7291-201ENSMUST00000199147 382 ntBASIC17.01■□□□□ 0.31
Clk3O35492 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.01■□□□□ 0.31
Clk3O35492 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.01■□□□□ 0.31
Clk3O35492 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.01■□□□□ 0.31
Clk3O35492 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC17.01■□□□□ 0.31
Clk3O35492 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Clk3O35492 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Clk3O35492 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms