Protein–RNA interactions for Protein: A3KG49

Gm5640, Predicted gene 5640, mousemouse

Predictions only

Length 728 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm5640A3KG49 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Gm5640A3KG49 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Gm5640A3KG49 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Gm5640A3KG49 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
Gm5640A3KG49 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
Gm5640A3KG49 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Gm5640A3KG49 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Gm19094-201ENSMUST00000209791 1246 ntBASIC18.2■□□□□ 0.5
Gm5640A3KG49 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.2■□□□□ 0.5
Gm5640A3KG49 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Gm5640A3KG49 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Gm5640A3KG49 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.19■□□□□ 0.5
Gm5640A3KG49 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Gm5640A3KG49 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.19■□□□□ 0.5
Gm5640A3KG49 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Gm5640A3KG49 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.18■□□□□ 0.5
Gm5640A3KG49 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Gm5640A3KG49 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Gm27801-201ENSMUST00000184174 223 ntBASIC18.17■□□□□ 0.5
Gm5640A3KG49 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.17■□□□□ 0.5
Gm5640A3KG49 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Gm5640A3KG49 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.16■□□□□ 0.5
Gm5640A3KG49 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.16■□□□□ 0.5
Gm5640A3KG49 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
Gm5640A3KG49 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms