Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gabrq-201ENSMUST00000033711 2000 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Fbxo3-204ENSMUST00000111136 4211 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm43363-201ENSMUST00000201590 2647 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Igkv4-78-201ENSMUST00000103343 358 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm13430-201ENSMUST00000121366 288 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm14970-201ENSMUST00000122289 355 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Crem-207ENSMUST00000126578 915 ntTSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Pard3bos2-201ENSMUST00000127498 770 ntTSL 3 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm13528-201ENSMUST00000139288 410 ntTSL 2 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 4930423M02Rik-202ENSMUST00000156903 1205 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm22235-201ENSMUST00000157085 110 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm24741-201ENSMUST00000158857 106 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm8159-201ENSMUST00000163738 997 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm3159-201ENSMUST00000164038 997 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm3127-201ENSMUST00000167839 997 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Vmn1r176-201ENSMUST00000171073 915 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm8297-201ENSMUST00000171636 997 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Mir5125-201ENSMUST00000175240 79 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Trav6-4-202ENSMUST00000184650 338 ntAPPRIS ALT2 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Frmd8os-202ENSMUST00000187697 516 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Igkv4-75-201ENSMUST00000197204 359 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm35037-201ENSMUST00000203144 506 ntTSL 3 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm44940-201ENSMUST00000206225 1247 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm17988-201ENSMUST00000208796 535 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 LOC665443-201ENSMUST00000212284 796 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 AC123832.2-201ENSMUST00000215151 129 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Asf1a-204ENSMUST00000219271 725 ntTSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm32172-201ENSMUST00000220029 633 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Tpbpb-203ENSMUST00000223978 991 ntAPPRIS ALT2 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Zfp457-201ENSMUST00000049705 2117 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Mir375-201ENSMUST00000083682 64 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm10258-201ENSMUST00000091270 2123 ntBASIC5.25□□□□□ -1.57
Nkx3-1P97436 Cldn34b3-201ENSMUST00000096389 1077 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Il1rl2-204ENSMUST00000194296 3908 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Kcnj1-202ENSMUST00000172015 3075 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm42397-206ENSMUST00000208808 1358 ntTSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Dnah6-201ENSMUST00000064948 12652 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Galnt5-203ENSMUST00000166729 3812 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Ktn1-223ENSMUST00000190999 4031 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Clec4a1-201ENSMUST00000060484 1558 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Vmn1r35-204ENSMUST00000227749 2254 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
Nkx3-1P97436 Gm37238-201ENSMUST00000195552 2390 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 4933431G14Rik-201ENSMUST00000205571 1670 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Vmn1r171-212ENSMUST00000228674 2488 ntAPPRIS ALT2 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Zfp791-202ENSMUST00000211109 2946 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm45117-201ENSMUST00000207250 1774 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Olfr398-203ENSMUST00000214334 5348 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Pdzph1-201ENSMUST00000025064 4174 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm37531-201ENSMUST00000191628 5415 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Ifi206-201ENSMUST00000160565 3047 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Tmprss11a-201ENSMUST00000101073 2657 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Pcdh9-208ENSMUST00000195826 6521 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Ccdc186-201ENSMUST00000076085 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Rab3b-202ENSMUST00000106650 3327 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 BC055402-201ENSMUST00000190488 3301 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Vps50-201ENSMUST00000001412 3788 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm42819-201ENSMUST00000199630 5121 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Mfsd4b4-201ENSMUST00000178045 3508 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Olfr1115-202ENSMUST00000213513 3604 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm42873-201ENSMUST00000196110 1726 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Olfr1004-ps1-201ENSMUST00000120361 580 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm12596-201ENSMUST00000124589 673 ntTSL 3 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 1600025M17Rik-201ENSMUST00000138262 666 ntTSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm12147-201ENSMUST00000144024 182 ntTSL 3 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Il2ra-202ENSMUST00000150890 1013 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 5330429C05Rik-201ENSMUST00000154615 487 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Mirt2-201ENSMUST00000175179 285 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm27209-201ENSMUST00000183834 898 ntTSL 3 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 7630403G23Rik-201ENSMUST00000184229 1084 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 4933436F18Rik-201ENSMUST00000193468 802 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm20770-201ENSMUST00000193474 694 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm44837-201ENSMUST00000206863 717 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm31904-201ENSMUST00000219446 877 ntTSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm18628-201ENSMUST00000220584 475 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 AC134254.2-201ENSMUST00000221262 170 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 AC211878.1-201ENSMUST00000221668 474 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 CT033781.1-201ENSMUST00000223128 454 ntTSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 AC164618.3-201ENSMUST00000224863 681 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 1810024B03Rik-201ENSMUST00000056146 1266 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 F730035P03Rik-201ENSMUST00000065741 917 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Mir143-201ENSMUST00000083511 63 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 4930432M17Rik-201ENSMUST00000098646 525 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Mat2a-201ENSMUST00000059472 2804 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Lifr-204ENSMUST00000226471 3392 ntAPPRIS P3 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Spata22-201ENSMUST00000117445 3200 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 4930532G15Rik-202ENSMUST00000195314 1457 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 Gm43900-201ENSMUST00000204868 2669 ntBASIC5.24□□□□□ -1.57
Nkx3-1P97436 9930038B18Rik-201ENSMUST00000151816 3966 ntTSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Taf13-204ENSMUST00000143054 2443 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Olfr958-203ENSMUST00000217227 3831 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Hc-201ENSMUST00000028233 5445 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
Nkx3-1P97436 Sis-201ENSMUST00000094190 5887 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
Nkx3-1P97436 Gm12057-201ENSMUST00000117244 1427 ntBASIC5.23□□□□□ -1.57
Nkx3-1P97436 Gm31121-201ENSMUST00000197948 1413 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Nkx3-1P97436 Fat4-201ENSMUST00000061260 16109 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Nkx3-1P97436 Trim30d-201ENSMUST00000033211 1904 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Nkx3-1P97436 Gm12018-201ENSMUST00000150694 3375 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Nkx3-1P97436 Olfr535-203ENSMUST00000213715 5033 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
Nkx3-1P97436 Otc-201ENSMUST00000049910 2319 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
Retrieved 100 of 76,532 protein–RNA pairs in 82.5 ms