Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Krtap5-1-202ENSMUST00000188274 742 ntBASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Rab11fip3Q8CHD8 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
Rab11fip3Q8CHD8 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Rab11fip3Q8CHD8 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
Rab11fip3Q8CHD8 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Rab11fip3Q8CHD8 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Rab11fip3Q8CHD8 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Gm10418-201ENSMUST00000100943 576 ntBASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Gm15565-201ENSMUST00000118890 427 ntBASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Gm5417-201ENSMUST00000079706 384 ntBASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Rab11fip3Q8CHD8 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Arhgef4-208ENSMUST00000211073 171 ntBASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Gm42922-201ENSMUST00000195887 2078 ntBASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Tgds-204ENSMUST00000228543 1594 ntBASIC23.31■■□□□ 1.32
Rab11fip3Q8CHD8 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 AC158538.1-201ENSMUST00000225870 294 ntBASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC23.3■■□□□ 1.32
Rab11fip3Q8CHD8 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 AC135963.1-201ENSMUST00000211640 717 ntBASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Rab11fip3Q8CHD8 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Rab11fip3Q8CHD8 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Rab11fip3Q8CHD8 Gm43213-201ENSMUST00000151866 1790 ntBASIC23.27■■□□□ 1.32
Rab11fip3Q8CHD8 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Rab11fip3Q8CHD8 Gm13836-201ENSMUST00000121159 501 ntBASIC23.27■■□□□ 1.32
Rab11fip3Q8CHD8 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Rab11fip3Q8CHD8 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Rab11fip3Q8CHD8 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Rab11fip3Q8CHD8 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Gm20472-201ENSMUST00000174403 1240 ntBASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Rab11fip3Q8CHD8 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Rab11fip3Q8CHD8 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Rab11fip3Q8CHD8 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Rab11fip3Q8CHD8 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
Rab11fip3Q8CHD8 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Rab11fip3Q8CHD8 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Rab11fip3Q8CHD8 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
Rab11fip3Q8CHD8 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms