Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ccdc40Q8BI79 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc40Q8BI79 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ccdc40Q8BI79 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.73■□□□□ 0.59
Ccdc40Q8BI79 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.73■□□□□ 0.59
Ccdc40Q8BI79 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc40Q8BI79 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ccdc40Q8BI79 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Ccdc40Q8BI79 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Gm26571-201ENSMUST00000181399 666 ntBASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Gm42569-201ENSMUST00000200539 472 ntBASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ccdc40Q8BI79 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ccdc40Q8BI79 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ccdc40Q8BI79 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Gm15039-201ENSMUST00000118914 875 ntBASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ccdc40Q8BI79 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc40Q8BI79 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ccdc40Q8BI79 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ccdc40Q8BI79 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms