Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sh3rf1Q69ZI1 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Nespas-201ENSMUST00000143738 1083 ntBASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Gm6420-201ENSMUST00000193885 723 ntBASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Sh3rf1Q69ZI1 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Gm4968-201ENSMUST00000071458 858 ntBASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sh3rf1Q69ZI1 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Gm5408-201ENSMUST00000197998 747 ntBASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Gm6365-201ENSMUST00000054711 744 ntBASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sh3rf1Q69ZI1 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Gm7860-201ENSMUST00000121190 879 ntBASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sh3rf1Q69ZI1 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
Sh3rf1Q69ZI1 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Sh3rf1Q69ZI1 Gm13148-201ENSMUST00000118892 745 ntBASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms