Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CtcfQ61164 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.78■□□□□ 0.76
CtcfQ61164 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CtcfQ61164 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CtcfQ61164 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CtcfQ61164 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.78■□□□□ 0.76
CtcfQ61164 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CtcfQ61164 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CtcfQ61164 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CtcfQ61164 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CtcfQ61164 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CtcfQ61164 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.77■□□□□ 0.76
CtcfQ61164 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.77■□□□□ 0.76
CtcfQ61164 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.77■□□□□ 0.76
CtcfQ61164 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CtcfQ61164 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CtcfQ61164 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CtcfQ61164 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CtcfQ61164 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CtcfQ61164 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.76■□□□□ 0.75
CtcfQ61164 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.76■□□□□ 0.75
CtcfQ61164 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.76■□□□□ 0.75
CtcfQ61164 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.76■□□□□ 0.75
CtcfQ61164 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.76■□□□□ 0.75
CtcfQ61164 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CtcfQ61164 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.76■□□□□ 0.75
CtcfQ61164 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CtcfQ61164 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.76■□□□□ 0.75
CtcfQ61164 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.76■□□□□ 0.75
CtcfQ61164 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC19.76■□□□□ 0.75
CtcfQ61164 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CtcfQ61164 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CtcfQ61164 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC19.75■□□□□ 0.75
CtcfQ61164 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.75■□□□□ 0.75
CtcfQ61164 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CtcfQ61164 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CtcfQ61164 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.74■□□□□ 0.75
CtcfQ61164 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CtcfQ61164 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
CtcfQ61164 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.74■□□□□ 0.75
CtcfQ61164 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.74■□□□□ 0.75
CtcfQ61164 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.74■□□□□ 0.75
CtcfQ61164 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CtcfQ61164 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.74■□□□□ 0.75
CtcfQ61164 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.73■□□□□ 0.75
CtcfQ61164 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CtcfQ61164 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Gm42778-201ENSMUST00000199644 553 ntBASIC19.73■□□□□ 0.75
CtcfQ61164 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CtcfQ61164 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CtcfQ61164 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 227.1 ms