Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Limch1Q3UH68 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Limch1Q3UH68 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Limch1Q3UH68 Gm22325-201ENSMUST00000158904 308 ntBASIC21.18■□□□□ 0.98
Limch1Q3UH68 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Limch1Q3UH68 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Limch1Q3UH68 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Limch1Q3UH68 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Limch1Q3UH68 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC21.18■□□□□ 0.98
Limch1Q3UH68 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Limch1Q3UH68 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Limch1Q3UH68 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Limch1Q3UH68 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC21.17■□□□□ 0.98
Limch1Q3UH68 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.17■□□□□ 0.98
Limch1Q3UH68 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Limch1Q3UH68 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Limch1Q3UH68 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Limch1Q3UH68 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Limch1Q3UH68 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Tgds-204ENSMUST00000228543 1594 ntBASIC21.15■□□□□ 0.98
Limch1Q3UH68 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC21.15■□□□□ 0.98
Limch1Q3UH68 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
Limch1Q3UH68 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Limch1Q3UH68 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Limch1Q3UH68 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21.14■□□□□ 0.97
Limch1Q3UH68 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC21.14■□□□□ 0.97
Limch1Q3UH68 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Limch1Q3UH68 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Limch1Q3UH68 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Limch1Q3UH68 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Limch1Q3UH68 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.13■□□□□ 0.97
Limch1Q3UH68 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC21.13■□□□□ 0.97
Limch1Q3UH68 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Gm5828-201ENSMUST00000071842 1860 ntBASIC21.13■□□□□ 0.97
Limch1Q3UH68 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Limch1Q3UH68 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC21.12■□□□□ 0.97
Limch1Q3UH68 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.12■□□□□ 0.97
Limch1Q3UH68 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Limch1Q3UH68 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms