Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.47■□□□□ 0.39
Col28a1Q2UY11 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
Col28a1Q2UY11 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col28a1Q2UY11 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.44■□□□□ 0.38
Col28a1Q2UY11 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Gm10602-201ENSMUST00000098239 609 ntBASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.44■□□□□ 0.38
Col28a1Q2UY11 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.43■□□□□ 0.38
Col28a1Q2UY11 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col28a1Q2UY11 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col28a1Q2UY11 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms