Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.84■□□□□ 0.61
Usp4P35123 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC18.84■□□□□ 0.61
Usp4P35123 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Usp4P35123 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.84■□□□□ 0.61
Usp4P35123 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp4P35123 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Usp4P35123 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp4P35123 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
Usp4P35123 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp4P35123 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Usp4P35123 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp4P35123 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp4P35123 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usp4P35123 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp4P35123 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp4P35123 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Usp4P35123 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Usp4P35123 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp4P35123 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Usp4P35123 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.83■□□□□ 0.6
Usp4P35123 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.83■□□□□ 0.6
Usp4P35123 Gm19094-201ENSMUST00000209791 1246 ntBASIC18.83■□□□□ 0.6
Usp4P35123 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Usp4P35123 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.83■□□□□ 0.6
Usp4P35123 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usp4P35123 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.82■□□□□ 0.6
Usp4P35123 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Usp4P35123 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp4P35123 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.82■□□□□ 0.6
Usp4P35123 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC18.82■□□□□ 0.6
Usp4P35123 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Usp4P35123 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Usp4P35123 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp4P35123 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.82■□□□□ 0.6
Usp4P35123 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp4P35123 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp4P35123 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usp4P35123 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Usp4P35123 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Usp4P35123 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp4P35123 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.81■□□□□ 0.6
Usp4P35123 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Usp4P35123 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
Usp4P35123 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp4P35123 Gm12933-201ENSMUST00000120203 872 ntBASIC18.81■□□□□ 0.6
Usp4P35123 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp4P35123 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp4P35123 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Usp4P35123 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp4P35123 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Usp4P35123 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.81■□□□□ 0.6
Usp4P35123 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usp4P35123 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Gm13234-201ENSMUST00000120010 747 ntBASIC18.8■□□□□ 0.6
Usp4P35123 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC18.8■□□□□ 0.6
Usp4P35123 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.8■□□□□ 0.6
Usp4P35123 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC18.8■□□□□ 0.6
Usp4P35123 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Usp4P35123 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
Usp4P35123 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp4P35123 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.8■□□□□ 0.6
Usp4P35123 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Usp4P35123 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Usp4P35123 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.79■□□□□ 0.6
Usp4P35123 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.79■□□□□ 0.6
Usp4P35123 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.79■□□□□ 0.6
Usp4P35123 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Usp4P35123 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp4P35123 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp4P35123 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp4P35123 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp4P35123 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Usp4P35123 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp4P35123 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Usp4P35123 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Usp4P35123 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp4P35123 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms