Protein–RNA interactions for Protein: O88834

Shd, SH2 domain-containing adapter protein D, mousemouse

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShdO88834 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
ShdO88834 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.39■□□□□ 0.53
ShdO88834 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
ShdO88834 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
ShdO88834 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ShdO88834 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
ShdO88834 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ShdO88834 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.38■□□□□ 0.53
ShdO88834 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.38■□□□□ 0.53
ShdO88834 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ShdO88834 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ShdO88834 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ShdO88834 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ShdO88834 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ShdO88834 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ShdO88834 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ShdO88834 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.37■□□□□ 0.53
ShdO88834 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ShdO88834 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ShdO88834 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ShdO88834 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ShdO88834 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ShdO88834 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ShdO88834 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ShdO88834 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ShdO88834 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.36■□□□□ 0.53
ShdO88834 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
ShdO88834 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ShdO88834 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.36■□□□□ 0.53
ShdO88834 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ShdO88834 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.36■□□□□ 0.53
ShdO88834 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.36■□□□□ 0.53
ShdO88834 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ShdO88834 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.36■□□□□ 0.53
ShdO88834 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.36■□□□□ 0.53
ShdO88834 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.36■□□□□ 0.53
ShdO88834 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Gm4968-201ENSMUST00000071458 858 ntBASIC18.36■□□□□ 0.53
ShdO88834 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ShdO88834 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ShdO88834 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ShdO88834 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.35■□□□□ 0.53
ShdO88834 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.35■□□□□ 0.53
ShdO88834 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.35■□□□□ 0.53
ShdO88834 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.35■□□□□ 0.53
ShdO88834 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ShdO88834 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ShdO88834 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
ShdO88834 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ShdO88834 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
ShdO88834 Gm12441-201ENSMUST00000121806 588 ntBASIC18.34■□□□□ 0.53
ShdO88834 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.34■□□□□ 0.53
ShdO88834 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.34■□□□□ 0.53
ShdO88834 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.34■□□□□ 0.53
ShdO88834 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.34■□□□□ 0.53
ShdO88834 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ShdO88834 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ShdO88834 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ShdO88834 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ShdO88834 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
ShdO88834 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
ShdO88834 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
ShdO88834 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
ShdO88834 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ShdO88834 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ShdO88834 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
ShdO88834 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ShdO88834 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ShdO88834 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.33■□□□□ 0.52
ShdO88834 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms