Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.56■□□□□ 0.56
Sdc4O35988 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.56■□□□□ 0.56
Sdc4O35988 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sdc4O35988 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.56■□□□□ 0.56
Sdc4O35988 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.56■□□□□ 0.56
Sdc4O35988 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sdc4O35988 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sdc4O35988 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Sdc4O35988 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.56■□□□□ 0.56
Sdc4O35988 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.55■□□□□ 0.56
Sdc4O35988 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Gm18025-201ENSMUST00000221733 862 ntBASIC18.55■□□□□ 0.56
Sdc4O35988 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Sdc4O35988 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.55■□□□□ 0.56
Sdc4O35988 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Sdc4O35988 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.54■□□□□ 0.56
Sdc4O35988 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.54■□□□□ 0.56
Sdc4O35988 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Sdc4O35988 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.54■□□□□ 0.56
Sdc4O35988 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Sdc4O35988 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.53■□□□□ 0.56
Sdc4O35988 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Sdc4O35988 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Gm43183-201ENSMUST00000200632 547 ntBASIC18.53■□□□□ 0.56
Sdc4O35988 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
Sdc4O35988 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.53■□□□□ 0.56
Sdc4O35988 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.53■□□□□ 0.56
Sdc4O35988 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Sdc4O35988 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.52■□□□□ 0.56
Sdc4O35988 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Sdc4O35988 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.52■□□□□ 0.56
Sdc4O35988 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Sdc4O35988 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Sdc4O35988 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Sdc4O35988 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.52■□□□□ 0.55
Sdc4O35988 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Sdc4O35988 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Mir7071-201ENSMUST00000184847 69 ntBASIC18.51■□□□□ 0.55
Sdc4O35988 Gm42545-201ENSMUST00000202755 922 ntBASIC18.51■□□□□ 0.55
Sdc4O35988 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.51■□□□□ 0.55
Sdc4O35988 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.51■□□□□ 0.55
Sdc4O35988 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.51■□□□□ 0.55
Sdc4O35988 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Sdc4O35988 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.5■□□□□ 0.55
Sdc4O35988 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Sdc4O35988 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
Sdc4O35988 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Sdc4O35988 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sdc4O35988 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sdc4O35988 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Sdc4O35988 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Sdc4O35988 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.5■□□□□ 0.55
Sdc4O35988 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Sdc4O35988 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.5■□□□□ 0.55
Sdc4O35988 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms