Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clk4O35493 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Clk4O35493 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.25■□□□□ 0.35
Clk4O35493 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.25■□□□□ 0.35
Clk4O35493 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Clk4O35493 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.25■□□□□ 0.35
Clk4O35493 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.25■□□□□ 0.35
Clk4O35493 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC17.25■□□□□ 0.35
Clk4O35493 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clk4O35493 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Clk4O35493 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.24■□□□□ 0.35
Clk4O35493 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk4O35493 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.24■□□□□ 0.35
Clk4O35493 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.24■□□□□ 0.35
Clk4O35493 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Clk4O35493 Gm44549-201ENSMUST00000208351 577 ntBASIC17.24■□□□□ 0.35
Clk4O35493 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk4O35493 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Clk4O35493 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk4O35493 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clk4O35493 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk4O35493 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk4O35493 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Clk4O35493 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.23■□□□□ 0.35
Clk4O35493 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.23■□□□□ 0.35
Clk4O35493 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk4O35493 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk4O35493 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk4O35493 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk4O35493 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Clk4O35493 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clk4O35493 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Clk4O35493 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Clk4O35493 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Clk4O35493 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Clk4O35493 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Clk4O35493 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Clk4O35493 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Clk4O35493 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Clk4O35493 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
Clk4O35493 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.21■□□□□ 0.35
Clk4O35493 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Clk4O35493 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Clk4O35493 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.21■□□□□ 0.34
Clk4O35493 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
Clk4O35493 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.2■□□□□ 0.34
Clk4O35493 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.2■□□□□ 0.34
Clk4O35493 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.2■□□□□ 0.34
Clk4O35493 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Clk4O35493 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.2■□□□□ 0.34
Clk4O35493 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.2■□□□□ 0.34
Clk4O35493 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.2■□□□□ 0.34
Clk4O35493 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms