Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Shprh-202ENSMUST00000054814 7225 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Cux1P53564 Olfr1404-201ENSMUST00000056592 1034 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Cux1P53564 n-R5s173-201ENSMUST00000082620 119 ntBASIC9.36□□□□□ -0.91
Cux1P53564 Gm11808-201ENSMUST00000089430 504 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
Cux1P53564 Gm15448-202ENSMUST00000108619 2097 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Cux1P53564 Ddx58-201ENSMUST00000037907 3874 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Epb41-201ENSMUST00000030739 6565 ntAPPRIS P3 TSL 5 BASIC9.35□□□□□ -0.91
Cux1P53564 Sp110-201ENSMUST00000093508 1921 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Fbxw27-208ENSMUST00000212725 1483 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Cux1P53564 Ap4e1-201ENSMUST00000002063 4600 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Gk-208ENSMUST00000156390 4245 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Lipk-203ENSMUST00000225505 2083 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Cux1P53564 Olfr1392-206ENSMUST00000215861 3670 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Cux1P53564 Vwc2l-201ENSMUST00000053922 4655 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 AW554918-201ENSMUST00000036619 5257 ntAPPRIS P5 TSL 5 BASIC9.35□□□□□ -0.91
Cux1P53564 Ppfia2-203ENSMUST00000217854 8885 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Vmn2r88-204ENSMUST00000228139 3227 ntAPPRIS ALT2 BASIC9.35□□□□□ -0.91
Cux1P53564 Olfr1386-202ENSMUST00000204518 2553 ntAPPRIS P1 TSL 3 BASIC9.35□□□□□ -0.91
Cux1P53564 Mef2c-228ENSMUST00000199450 2862 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Gm8501-201ENSMUST00000117684 432 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm11804-201ENSMUST00000121663 468 ntBASIC9.35□□□□□ -0.91
Cux1P53564 1700041M05Rik-201ENSMUST00000130055 306 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Gm24216-201ENSMUST00000158259 117 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm28066-201ENSMUST00000188657 472 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm29111-201ENSMUST00000188823 696 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm28584-201ENSMUST00000191489 696 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm18407-201ENSMUST00000192126 790 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm38138-201ENSMUST00000193274 696 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm37991-201ENSMUST00000194297 696 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm42522-201ENSMUST00000196071 255 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm43148-201ENSMUST00000198237 520 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Gm4872-201ENSMUST00000205210 1299 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Gm4032-201ENSMUST00000210886 487 ntBASIC9.35□□□□□ -0.91
Cux1P53564 Olfr635-201ENSMUST00000098185 966 ntAPPRIS P2 BASIC9.35□□□□□ -0.91
Cux1P53564 Nsun6-208ENSMUST00000195749 3149 ntAPPRIS P3 TSL 5 BASIC9.35□□□□□ -0.91
Cux1P53564 Ugt2b38-201ENSMUST00000072818 1891 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Cux1P53564 Gm38036-201ENSMUST00000194586 3564 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Pigc-202ENSMUST00000111594 3290 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cux1P53564 C230038L03Rik-201ENSMUST00000129409 2632 ntTSL 2 BASIC9.34□□□□□ -0.91
Cux1P53564 Tph1-201ENSMUST00000049298 4562 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cux1P53564 Il18r1-205ENSMUST00000193793 1652 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cux1P53564 Slamf6-201ENSMUST00000171330 2485 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cux1P53564 Olfr313-202ENSMUST00000217506 2612 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 Ipcef1-203ENSMUST00000105617 6041 ntAPPRIS P3 TSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 Serpina3b-201ENSMUST00000085052 2070 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cux1P53564 Cntn1-204ENSMUST00000169825 5671 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 C030015A19Rik-201ENSMUST00000203368 2551 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Myct1-201ENSMUST00000051809 2845 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Cux1P53564 Gm13770-201ENSMUST00000117149 305 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Gm14808-201ENSMUST00000129259 361 ntTSL 3 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm26106-201ENSMUST00000157254 228 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Gm24359-201ENSMUST00000158418 221 ntBASIC9.34□□□□□ -0.91
Cux1P53564 BC035044-202ENSMUST00000178918 466 ntAPPRIS ALT2 TSL 2 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm29377-201ENSMUST00000185892 1161 ntTSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm29467-202ENSMUST00000189669 935 ntTSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm29633-207ENSMUST00000190523 737 ntTSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm37839-201ENSMUST00000192576 492 ntTSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm43743-202ENSMUST00000198353 491 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Gm44955-201ENSMUST00000208843 229 ntTSL 5 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm18705-201ENSMUST00000215985 913 ntBASIC9.34□□□□□ -0.91
Cux1P53564 AC164164.2-201ENSMUST00000221809 785 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Olfr378-201ENSMUST00000069790 1508 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
Cux1P53564 Gm20706-201ENSMUST00000175985 2023 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Gm30075-201ENSMUST00000205509 3005 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Cux1P53564 Lrrc31-201ENSMUST00000108263 3284 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
Cux1P53564 AC158595.1-201ENSMUST00000217989 1435 ntBASIC9.34□□□□□ -0.91
Cux1P53564 Dock2-202ENSMUST00000101364 1616 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Gm46430-206ENSMUST00000222064 1647 ntTSL 3 BASIC9.33□□□□□ -0.92
Cux1P53564 Yme1l1-201ENSMUST00000028117 4707 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 AA792892-202ENSMUST00000202253 1980 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Smc5-201ENSMUST00000087556 5683 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Ralgapa2-205ENSMUST00000131824 5624 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Mir1188-201ENSMUST00000116756 120 ntBASIC9.33□□□□□ -0.92
Cux1P53564 Mir1907-201ENSMUST00000122509 90 ntBASIC9.33□□□□□ -0.92
Cux1P53564 Gm27855-201ENSMUST00000184122 128 ntBASIC9.33□□□□□ -0.92
Cux1P53564 Igkv12-66-201ENSMUST00000199305 348 ntBASIC9.33□□□□□ -0.92
Cux1P53564 Unc80-206ENSMUST00000212557 9777 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Olfr878-202ENSMUST00000212878 1064 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Cux1P53564 Olfr1134-203ENSMUST00000213939 1015 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Cux1P53564 AC108846.2-201ENSMUST00000214925 731 ntTSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm7768-201ENSMUST00000222988 597 ntBASIC9.33□□□□□ -0.92
Cux1P53564 CT030238.4-203ENSMUST00000227343 836 ntBASIC9.33□□□□□ -0.92
Cux1P53564 Trps1-201ENSMUST00000077935 4436 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Stk32a-201ENSMUST00000045477 3765 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Col6a6-201ENSMUST00000060896 3954 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Clrn3-201ENSMUST00000053716 3305 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Bbx-201ENSMUST00000066037 4523 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Slc26a9-201ENSMUST00000049027 4739 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 AC110043.1-201ENSMUST00000220278 1627 ntBASIC9.33□□□□□ -0.92
Cux1P53564 Tceal1-201ENSMUST00000055104 2803 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Olfr720-202ENSMUST00000206298 4437 ntAPPRIS P1 TSL 3 BASIC9.33□□□□□ -0.92
Cux1P53564 Vmn1r51-201ENSMUST00000072859 2567 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm29660-201ENSMUST00000185631 2166 ntTSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm29309-201ENSMUST00000186251 2166 ntTSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm29379-201ENSMUST00000186305 2166 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Gm28276-201ENSMUST00000188508 2166 ntTSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm28201-201ENSMUST00000189989 2166 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Gm29632-201ENSMUST00000190335 2166 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Gm29446-201ENSMUST00000190887 2166 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 67.6 ms