Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Prpf40aQ9R1C7 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Prpf40aQ9R1C7 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Prpf40aQ9R1C7 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Gm13148-201ENSMUST00000118892 745 ntBASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Prpf40aQ9R1C7 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Prpf40aQ9R1C7 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Prpf40aQ9R1C7 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Prpf40aQ9R1C7 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Prpf40aQ9R1C7 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms