Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cpsf3Q9QXK7 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Gm18666-201ENSMUST00000190039 958 ntBASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cpsf3Q9QXK7 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
Cpsf3Q9QXK7 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.42■□□□□ 0.7
Cpsf3Q9QXK7 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cpsf3Q9QXK7 Tgds-204ENSMUST00000228543 1594 ntBASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cpsf3Q9QXK7 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cpsf3Q9QXK7 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cpsf3Q9QXK7 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.39■□□□□ 0.7
Cpsf3Q9QXK7 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cpsf3Q9QXK7 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cpsf3Q9QXK7 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms