Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nkx2-4Q9EQM3 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nkx2-4Q9EQM3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Nkx2-4Q9EQM3 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nkx2-4Q9EQM3 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nkx2-4Q9EQM3 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nkx2-4Q9EQM3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Nkx2-4Q9EQM3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Nkx2-4Q9EQM3 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Gm5587-201ENSMUST00000206270 674 ntBASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Nkx2-4Q9EQM3 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Gm21559-201ENSMUST00000220638 855 ntBASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Gm8587-201ENSMUST00000076538 843 ntBASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Nkx2-4Q9EQM3 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Gm29518-201ENSMUST00000190858 372 ntBASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Gm18669-201ENSMUST00000216049 778 ntBASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Nkx2-4Q9EQM3 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Gm27389-201ENSMUST00000183622 195 ntBASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Nkx2-4Q9EQM3 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Nkx2-4Q9EQM3 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Nkx2-4Q9EQM3 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Nkx2-4Q9EQM3 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Nkx2-4Q9EQM3 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Nkx2-4Q9EQM3 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms