Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Gm8520-201ENSMUST00000186517 868 ntBASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Vps28Q9D1C8 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Gm13168-201ENSMUST00000121771 632 ntBASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Flg-201ENSMUST00000050758 1488 ntBASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.49■□□□□ 0.55
Vps28Q9D1C8 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Gm7856-201ENSMUST00000117514 1493 ntBASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Rarb-207ENSMUST00000225921 2756 ntBASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps28Q9D1C8 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps28Q9D1C8 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Gm11249-201ENSMUST00000117071 859 ntBASIC18.46■□□□□ 0.55
Vps28Q9D1C8 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Gm22240-201ENSMUST00000175225 82 ntBASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps28Q9D1C8 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.46■□□□□ 0.54
Vps28Q9D1C8 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps28Q9D1C8 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps28Q9D1C8 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms