Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.15■□□□□ 0.82
Smc1aQ9CU62 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Smc1aQ9CU62 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Smc1aQ9CU62 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Smc1aQ9CU62 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.14■□□□□ 0.81
Smc1aQ9CU62 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Gm37856-201ENSMUST00000191634 999 ntBASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
Smc1aQ9CU62 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smc1aQ9CU62 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Gm7860-201ENSMUST00000121190 879 ntBASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Gm10812-201ENSMUST00000099864 546 ntBASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Fst-202ENSMUST00000223640 2612 ntBASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smc1aQ9CU62 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Smc1aQ9CU62 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.1■□□□□ 0.81
Smc1aQ9CU62 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.09■□□□□ 0.81
Smc1aQ9CU62 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.09■□□□□ 0.81
Smc1aQ9CU62 Trmt13-210ENSMUST00000198454 880 ntBASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms