Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.09■□□□□ 0.33
Use1Q9CQ56 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.09■□□□□ 0.33
Use1Q9CQ56 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Fst-202ENSMUST00000223640 2612 ntBASIC17.09■□□□□ 0.33
Use1Q9CQ56 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Use1Q9CQ56 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Use1Q9CQ56 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Use1Q9CQ56 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Use1Q9CQ56 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Gm13534-201ENSMUST00000121169 513 ntBASIC17.07■□□□□ 0.32
Use1Q9CQ56 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.07■□□□□ 0.32
Use1Q9CQ56 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Use1Q9CQ56 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.06■□□□□ 0.32
Use1Q9CQ56 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Gm13234-201ENSMUST00000120010 747 ntBASIC17.06■□□□□ 0.32
Use1Q9CQ56 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
Use1Q9CQ56 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.06■□□□□ 0.32
Use1Q9CQ56 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Use1Q9CQ56 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Use1Q9CQ56 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Use1Q9CQ56 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Use1Q9CQ56 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms