Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Gm27275-201ENSMUST00000184318 272 ntBASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ushbp1Q8R370 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Gm7977-201ENSMUST00000193787 748 ntBASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ushbp1Q8R370 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ushbp1Q8R370 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Ushbp1Q8R370 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Ushbp1Q8R370 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ushbp1Q8R370 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ushbp1Q8R370 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ushbp1Q8R370 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ushbp1Q8R370 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ushbp1Q8R370 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ushbp1Q8R370 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ushbp1Q8R370 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ushbp1Q8R370 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.18■□□□□ 0.82
Ushbp1Q8R370 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms