Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cchcr1Q8K2I2 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cchcr1Q8K2I2 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Gm42900-201ENSMUST00000197184 2167 ntBASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cchcr1Q8K2I2 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cchcr1Q8K2I2 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 AV356131-201ENSMUST00000206201 750 ntBASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cchcr1Q8K2I2 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cchcr1Q8K2I2 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cchcr1Q8K2I2 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cchcr1Q8K2I2 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Cchcr1Q8K2I2 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC21.33■■□□□ 1.01
Cchcr1Q8K2I2 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cchcr1Q8K2I2 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cchcr1Q8K2I2 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
Cchcr1Q8K2I2 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC21.33■■□□□ 1
Cchcr1Q8K2I2 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cchcr1Q8K2I2 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Gm10461-201ENSMUST00000202073 4786 ntBASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cchcr1Q8K2I2 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Cchcr1Q8K2I2 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Cchcr1Q8K2I2 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms