Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28bQ8CEG5 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28bQ8CEG5 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28bQ8CEG5 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Ccdc28bQ8CEG5 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28bQ8CEG5 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ccdc28bQ8CEG5 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.86■□□□□ 0.45
Ccdc28bQ8CEG5 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Ccdc28bQ8CEG5 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Ccdc28bQ8CEG5 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28bQ8CEG5 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28bQ8CEG5 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28bQ8CEG5 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28bQ8CEG5 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Ccdc28bQ8CEG5 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28bQ8CEG5 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.83■□□□□ 0.44
Ccdc28bQ8CEG5 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.83■□□□□ 0.44
Ccdc28bQ8CEG5 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28bQ8CEG5 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28bQ8CEG5 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Ccdc28bQ8CEG5 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Ccdc28bQ8CEG5 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Gm9847-201ENSMUST00000052528 599 ntBASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc28bQ8CEG5 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 AC121961.1-201ENSMUST00000218594 1779 ntBASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc28bQ8CEG5 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Gm37166-201ENSMUST00000195473 2474 ntBASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ccdc28bQ8CEG5 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc28bQ8CEG5 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms