Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm18666-201ENSMUST00000190039 958 ntBASIC21.34■■□□□ 1.01
Trim56Q80VI1 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.34■■□□□ 1.01
Trim56Q80VI1 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim56Q80VI1 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.33■■□□□ 1.01
Trim56Q80VI1 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
Trim56Q80VI1 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC21.33■■□□□ 1
Trim56Q80VI1 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trim56Q80VI1 Gm45560-201ENSMUST00000211492 1472 ntBASIC21.32■■□□□ 1
Trim56Q80VI1 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
Trim56Q80VI1 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim56Q80VI1 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim56Q80VI1 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC21.32■■□□□ 1
Trim56Q80VI1 H2-K2-201ENSMUST00000174250 1049 ntBASIC21.32■■□□□ 1
Trim56Q80VI1 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim56Q80VI1 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim56Q80VI1 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim56Q80VI1 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC21.32■■□□□ 1
Trim56Q80VI1 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
Trim56Q80VI1 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.31■■□□□ 1
Trim56Q80VI1 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Trim56Q80VI1 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC21.31■■□□□ 1
Trim56Q80VI1 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC21.31■■□□□ 1
Trim56Q80VI1 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC21.31■■□□□ 1
Trim56Q80VI1 Gm10138-203ENSMUST00000206952 366 ntBASIC21.31■■□□□ 1
Trim56Q80VI1 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.31■■□□□ 1
Trim56Q80VI1 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.31■■□□□ 1
Trim56Q80VI1 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim56Q80VI1 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.3■■□□□ 1
Trim56Q80VI1 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Mir2861-201ENSMUST00000175539 82 ntBASIC21.3■■□□□ 1
Trim56Q80VI1 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim56Q80VI1 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC21.29■■□□□ 1
Trim56Q80VI1 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Gm15375-201ENSMUST00000119510 849 ntBASIC21.29■■□□□ 1
Trim56Q80VI1 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC21.29■■□□□ 1
Trim56Q80VI1 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC21.29■■□□□ 1
Trim56Q80VI1 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim56Q80VI1 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC21.28■■□□□ 1
Trim56Q80VI1 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Gm10654-201ENSMUST00000098653 1633 ntBASIC21.28■■□□□ 1
Trim56Q80VI1 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC21.28■■□□□ 1
Trim56Q80VI1 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim56Q80VI1 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim56Q80VI1 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
Trim56Q80VI1 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms