Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Rif1Q6PR54 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.21■□□□□ 0.02
Rif1Q6PR54 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rif1Q6PR54 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Rif1Q6PR54 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Rif1Q6PR54 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Rif1Q6PR54 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Gm5364-201ENSMUST00000216789 889 ntBASIC15.2■□□□□ 0.02
Rif1Q6PR54 AC160393.1-201ENSMUST00000218378 1279 ntBASIC15.2■□□□□ 0.02
Rif1Q6PR54 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC15.2■□□□□ 0.02
Rif1Q6PR54 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.2■□□□□ 0.02
Rif1Q6PR54 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Rif1Q6PR54 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Rif1Q6PR54 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Cdkn3-203ENSMUST00000227149 1952 ntBASIC15.19■□□□□ 0.02
Rif1Q6PR54 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Rif1Q6PR54 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Gm8000-201ENSMUST00000188378 592 ntBASIC15.18■□□□□ 0.02
Rif1Q6PR54 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Zfp783-201ENSMUST00000095946 670 ntBASIC15.18■□□□□ 0.02
Rif1Q6PR54 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
Rif1Q6PR54 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rif1Q6PR54 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Gm15467-201ENSMUST00000120582 445 ntBASIC15.16■□□□□ 0.02
Rif1Q6PR54 Gm11355-201ENSMUST00000121120 306 ntBASIC15.16■□□□□ 0.02
Rif1Q6PR54 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Rps4l-201ENSMUST00000071745 943 ntBASIC15.16■□□□□ 0.02
Rif1Q6PR54 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms