Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Smarca1Q6PGB8 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Smarca1Q6PGB8 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Trmt13-210ENSMUST00000198454 880 ntBASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Gm2559-201ENSMUST00000201323 363 ntBASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Smarca1Q6PGB8 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.08■□□□□ 0.8
Smarca1Q6PGB8 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Smarca1Q6PGB8 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Smarca1Q6PGB8 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Smarca1Q6PGB8 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Smarca1Q6PGB8 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Gm22240-201ENSMUST00000175225 82 ntBASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Smarca1Q6PGB8 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Smarca1Q6PGB8 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Gm12896-201ENSMUST00000118430 226 ntBASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Gm44878-201ENSMUST00000205812 1295 ntBASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Smarca1Q6PGB8 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Dio3-201ENSMUST00000097228 1449 ntBASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Smarca1Q6PGB8 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Gm13168-201ENSMUST00000121771 632 ntBASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Smarca1Q6PGB8 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Smarca1Q6PGB8 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Smarca1Q6PGB8 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms