Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps54Q5SPW0 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps54Q5SPW0 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 H2-K2-201ENSMUST00000174250 1049 ntBASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.68■■□□□ 1.06
Vps54Q5SPW0 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Vps54Q5SPW0 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Gm45560-201ENSMUST00000211492 1472 ntBASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
Vps54Q5SPW0 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Gm10138-203ENSMUST00000206952 366 ntBASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vps54Q5SPW0 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps54Q5SPW0 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.64■■□□□ 1.06
Vps54Q5SPW0 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps54Q5SPW0 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps54Q5SPW0 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.64■■□□□ 1.06
Vps54Q5SPW0 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vps54Q5SPW0 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 AC123834.2-201ENSMUST00000224038 2340 ntBASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Fam105a-203ENSMUST00000226170 3043 ntBASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Vps54Q5SPW0 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Gm5953-201ENSMUST00000220644 2616 ntBASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Gm15375-201ENSMUST00000119510 849 ntBASIC21.63■■□□□ 1.05
Vps54Q5SPW0 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Gm10812-201ENSMUST00000099864 546 ntBASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Vps54Q5SPW0 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.62■■□□□ 1.05
Vps54Q5SPW0 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Vps54Q5SPW0 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.62■■□□□ 1.05
Vps54Q5SPW0 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps54Q5SPW0 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps54Q5SPW0 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps54Q5SPW0 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vps54Q5SPW0 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps54Q5SPW0 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Vps54Q5SPW0 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Vps54Q5SPW0 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Vps54Q5SPW0 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms