Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 AC121577.1-201ENSMUST00000227302 707 ntBASIC19.61■□□□□ 0.73
Lig3P97386 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
Lig3P97386 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.6■□□□□ 0.73
Lig3P97386 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Lig3P97386 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.6■□□□□ 0.73
Lig3P97386 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lig3P97386 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.59■□□□□ 0.73
Lig3P97386 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Lig3P97386 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.59■□□□□ 0.73
Lig3P97386 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.59■□□□□ 0.73
Lig3P97386 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Lig3P97386 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lig3P97386 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.58■□□□□ 0.73
Lig3P97386 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lig3P97386 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lig3P97386 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Lig3P97386 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lig3P97386 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Lig3P97386 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Lig3P97386 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
Lig3P97386 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.58■□□□□ 0.72
Lig3P97386 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lig3P97386 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lig3P97386 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lig3P97386 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lig3P97386 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Lig3P97386 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lig3P97386 Dio3-201ENSMUST00000097228 1449 ntBASIC19.58■□□□□ 0.72
Lig3P97386 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
Lig3P97386 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.57■□□□□ 0.72
Lig3P97386 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC19.57■□□□□ 0.72
Lig3P97386 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.57■□□□□ 0.72
Lig3P97386 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.57■□□□□ 0.72
Lig3P97386 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Gm9987-201ENSMUST00000069768 567 ntBASIC19.57■□□□□ 0.72
Lig3P97386 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Lig3P97386 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Lig3P97386 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Lig3P97386 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lig3P97386 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Lig3P97386 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lig3P97386 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.56■□□□□ 0.72
Lig3P97386 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Lig3P97386 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Lig3P97386 Gm18666-201ENSMUST00000190039 958 ntBASIC19.56■□□□□ 0.72
Lig3P97386 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lig3P97386 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
Lig3P97386 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Lig3P97386 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Lig3P97386 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lig3P97386 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.55■□□□□ 0.72
Lig3P97386 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.55■□□□□ 0.72
Lig3P97386 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Lig3P97386 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Lig3P97386 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Gm10698-201ENSMUST00000182663 604 ntBASIC19.55■□□□□ 0.72
Lig3P97386 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms