Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.12■□□□□ 0.65
Shmt1P50431 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Shmt1P50431 Gm10698-201ENSMUST00000182663 604 ntBASIC19.12■□□□□ 0.65
Shmt1P50431 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.12■□□□□ 0.65
Shmt1P50431 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Shmt1P50431 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shmt1P50431 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Shmt1P50431 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shmt1P50431 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shmt1P50431 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Shmt1P50431 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shmt1P50431 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shmt1P50431 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Shmt1P50431 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shmt1P50431 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.11■□□□□ 0.65
Shmt1P50431 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Shmt1P50431 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.1■□□□□ 0.65
Shmt1P50431 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.1■□□□□ 0.65
Shmt1P50431 Gm18666-201ENSMUST00000190039 958 ntBASIC19.1■□□□□ 0.65
Shmt1P50431 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.1■□□□□ 0.65
Shmt1P50431 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Shmt1P50431 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Shmt1P50431 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.09■□□□□ 0.65
Shmt1P50431 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.09■□□□□ 0.65
Shmt1P50431 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.09■□□□□ 0.65
Shmt1P50431 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Shmt1P50431 Tgds-204ENSMUST00000228543 1594 ntBASIC19.09■□□□□ 0.65
Shmt1P50431 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Shmt1P50431 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Shmt1P50431 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Shmt1P50431 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.08■□□□□ 0.64
Shmt1P50431 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.08■□□□□ 0.64
Shmt1P50431 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Shmt1P50431 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.07■□□□□ 0.64
Shmt1P50431 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.07■□□□□ 0.64
Shmt1P50431 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Shmt1P50431 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Shmt1P50431 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Shmt1P50431 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shmt1P50431 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shmt1P50431 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
Shmt1P50431 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.06■□□□□ 0.64
Shmt1P50431 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shmt1P50431 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shmt1P50431 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shmt1P50431 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Shmt1P50431 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
Shmt1P50431 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.05■□□□□ 0.64
Shmt1P50431 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.05■□□□□ 0.64
Shmt1P50431 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Shmt1P50431 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.05■□□□□ 0.64
Shmt1P50431 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Shmt1P50431 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.04■□□□□ 0.64
Shmt1P50431 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Shmt1P50431 Gm10138-203ENSMUST00000206952 366 ntBASIC19.04■□□□□ 0.64
Shmt1P50431 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.04■□□□□ 0.64
Shmt1P50431 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Shmt1P50431 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shmt1P50431 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
Shmt1P50431 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shmt1P50431 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shmt1P50431 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Shmt1P50431 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Shmt1P50431 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms