Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Use1Q9CQ56 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Use1Q9CQ56 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.15■□□□□ 0.34
Use1Q9CQ56 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Use1Q9CQ56 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Use1Q9CQ56 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Use1Q9CQ56 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Use1Q9CQ56 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Use1Q9CQ56 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Use1Q9CQ56 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.14■□□□□ 0.33
Use1Q9CQ56 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Use1Q9CQ56 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Use1Q9CQ56 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
Use1Q9CQ56 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Use1Q9CQ56 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.13■□□□□ 0.33
Use1Q9CQ56 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Use1Q9CQ56 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
Use1Q9CQ56 Reep4-203ENSMUST00000226563 1444 ntBASIC17.13■□□□□ 0.33
Use1Q9CQ56 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Gm13146-201ENSMUST00000118508 780 ntBASIC17.12■□□□□ 0.33
Use1Q9CQ56 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.12■□□□□ 0.33
Use1Q9CQ56 AC107452.1-201ENSMUST00000227963 481 ntBASIC17.12■□□□□ 0.33
Use1Q9CQ56 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC17.12■□□□□ 0.33
Use1Q9CQ56 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Use1Q9CQ56 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Gm8309-201ENSMUST00000206627 1448 ntBASIC17.11■□□□□ 0.33
Use1Q9CQ56 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Use1Q9CQ56 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Use1Q9CQ56 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Use1Q9CQ56 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Use1Q9CQ56 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms