Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Clp1Q99LI9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Gm12085-201ENSMUST00000119263 940 ntBASIC19.18■□□□□ 0.66
Clp1Q99LI9 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Gm33142-201ENSMUST00000193913 867 ntBASIC19.18■□□□□ 0.66
Clp1Q99LI9 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Gm20634-201ENSMUST00000090779 2956 ntBASIC19.18■□□□□ 0.66
Clp1Q99LI9 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clp1Q99LI9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Gm38027-201ENSMUST00000192315 235 ntBASIC19.17■□□□□ 0.66
Clp1Q99LI9 Gm43353-201ENSMUST00000199224 1295 ntBASIC19.17■□□□□ 0.66
Clp1Q99LI9 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clp1Q99LI9 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Clp1Q99LI9 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clp1Q99LI9 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Gm27741-201ENSMUST00000185060 237 ntBASIC19.15■□□□□ 0.66
Clp1Q99LI9 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC19.15■□□□□ 0.66
Clp1Q99LI9 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Clp1Q99LI9 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Clp1Q99LI9 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Clp1Q99LI9 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Mir5130-201ENSMUST00000175160 84 ntBASIC19.14■□□□□ 0.65
Clp1Q99LI9 Gm2274-201ENSMUST00000184539 609 ntBASIC19.14■□□□□ 0.65
Clp1Q99LI9 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Clp1Q99LI9 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
Clp1Q99LI9 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC19.14■□□□□ 0.65
Clp1Q99LI9 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Clp1Q99LI9 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.14■□□□□ 0.65
Clp1Q99LI9 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Clp1Q99LI9 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms