Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim9Q8C7M3 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim9Q8C7M3 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.02■□□□□ 0.79
Trim9Q8C7M3 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim9Q8C7M3 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.02■□□□□ 0.79
Trim9Q8C7M3 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim9Q8C7M3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Trim9Q8C7M3 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.01■□□□□ 0.79
Trim9Q8C7M3 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim9Q8C7M3 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20■□□□□ 0.79
Trim9Q8C7M3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Trim9Q8C7M3 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim9Q8C7M3 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Gm44549-201ENSMUST00000208351 577 ntBASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Rab3c-203ENSMUST00000224180 967 ntBASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Trim9Q8C7M3 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim9Q8C7M3 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.97■□□□□ 0.79
Trim9Q8C7M3 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim9Q8C7M3 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.97■□□□□ 0.79
Trim9Q8C7M3 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Trim9Q8C7M3 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim9Q8C7M3 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Trim9Q8C7M3 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim9Q8C7M3 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim9Q8C7M3 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Gm2399-201ENSMUST00000104944 225 ntBASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim9Q8C7M3 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim9Q8C7M3 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms