Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Gm5953-201ENSMUST00000220644 2616 ntBASIC21.42■■□□□ 1.02
Trim56Q80VI1 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Trim56Q80VI1 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
Trim56Q80VI1 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Gm8520-201ENSMUST00000186517 868 ntBASIC21.4■■□□□ 1.02
Trim56Q80VI1 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trim56Q80VI1 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
Trim56Q80VI1 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Trim56Q80VI1 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.39■■□□□ 1.02
Trim56Q80VI1 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Trim56Q80VI1 AC123834.2-201ENSMUST00000224038 2340 ntBASIC21.39■■□□□ 1.02
Trim56Q80VI1 Gm13158-201ENSMUST00000122007 736 ntBASIC21.39■■□□□ 1.01
Trim56Q80VI1 Gm22240-201ENSMUST00000175225 82 ntBASIC21.39■■□□□ 1.01
Trim56Q80VI1 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Trim56Q80VI1 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trim56Q80VI1 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.39■■□□□ 1.01
Trim56Q80VI1 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trim56Q80VI1 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC21.38■■□□□ 1.01
Trim56Q80VI1 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trim56Q80VI1 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Gm10698-201ENSMUST00000182663 604 ntBASIC21.37■■□□□ 1.01
Trim56Q80VI1 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trim56Q80VI1 Nrn1-203ENSMUST00000223611 1443 ntBASIC21.37■■□□□ 1.01
Trim56Q80VI1 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC21.36■■□□□ 1.01
Trim56Q80VI1 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trim56Q80VI1 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trim56Q80VI1 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Trim56Q80VI1 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim56Q80VI1 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trim56Q80VI1 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.35■■□□□ 1.01
Trim56Q80VI1 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC21.35■■□□□ 1.01
Trim56Q80VI1 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
Trim56Q80VI1 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trim56Q80VI1 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim56Q80VI1 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim56Q80VI1 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trim56Q80VI1 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trim56Q80VI1 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms