Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Pif1Q80SX8 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Pif1Q80SX8 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pif1Q80SX8 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Pif1Q80SX8 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.68■□□□□ 0.26
Pif1Q80SX8 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Pif1Q80SX8 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.67■□□□□ 0.26
Pif1Q80SX8 AC121577.1-201ENSMUST00000227302 707 ntBASIC16.67■□□□□ 0.26
Pif1Q80SX8 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Pif1Q80SX8 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC16.66■□□□□ 0.26
Pif1Q80SX8 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Gm43183-201ENSMUST00000200632 547 ntBASIC16.66■□□□□ 0.26
Pif1Q80SX8 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Pif1Q80SX8 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Gm10138-203ENSMUST00000206952 366 ntBASIC16.65■□□□□ 0.26
Pif1Q80SX8 AC175538.1-201ENSMUST00000225343 1269 ntBASIC16.65■□□□□ 0.26
Pif1Q80SX8 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Dapk1-207ENSMUST00000226059 5009 ntBASIC16.65■□□□□ 0.26
Pif1Q80SX8 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC16.65■□□□□ 0.26
Pif1Q80SX8 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Pif1Q80SX8 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Pif1Q80SX8 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pif1Q80SX8 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms