Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Gm11539-201ENSMUST00000119837 557 ntBASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Gm13436-201ENSMUST00000120418 567 ntBASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Rnf43Q5NCP0 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Rnf43Q5NCP0 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Mir6349-201ENSMUST00000184059 97 ntBASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Rnf43Q5NCP0 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.44■□□□□ 0.54
Rnf43Q5NCP0 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Rnf43Q5NCP0 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rnf43Q5NCP0 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Gm6659-201ENSMUST00000174752 547 ntBASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Gm7889-201ENSMUST00000185591 958 ntBASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rnf43Q5NCP0 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rnf43Q5NCP0 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms